Hi all,
I’m wondering if people have tips, or standard bash codes for downloading files from OSDR?
Potentially something similar to SRA-tools’s fastq dump.
Best,
Yen-Kai
Hi @yenkai.chen.id,
Datasets on OSDR can be access via our API:
Some example API calls can be found here:
OSDR files can also be downloaded programmatically through our public s3 bucket.
Tutorial: Use the OSDR Public AWS S3 Bucket — OSDR Tutorials
s3 registry: NASA Space Biology Open Science Data Repository (OSDR) - Registry of Open Data on AWS
s3 bucket browser: http://nasa-osdr.s3-website-us-west-2.amazonaws.com/
If you’re unfamilar with AWS CLI, you can find out more here: Getting started with the AWS CLI - AWS Command Line Interface
Please note that when downloading files from our public s3 bucket, you will need to specify the OSD version number. The current version can be found to the right of the OSD # on each study page. If you are looking for a version of a study that is not available in the public s3 bucket, please let me know.