Pseudo-time-series plan

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Hi Guys
Who would be interested in collaborating on an analysis of a “pseudo-time series of seedlings in Space”. Here’s a link to GitHub page where I’ve outlined the opportunity and saved some results from preliminary analysis of Data from OSDR. Time series data can be used to model transcription factors that regulate long-term responses. Please let me know what you think? :smiley: Cheers DRB

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That sounds great Richard! Once we “release” this discourse site, I’ll make sure to tag users

Thanks for posting! :tada::hugs: @dr.richard.barker

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Hi Guys, further work on this project and repo have led to the evolution of this “Gitbook” method to present current state of the project. Feel free to add ideas for how to improve this book in the google spreadsheet linked on the “Project planning” page. Data and figures can be found in the underliying github repo. Action Plan | Pseudo-time-series seedling establishment in micro

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@dr.richard.barker I am interested in collaborating on this pseudo-time series of seedlings in Space analysis.

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That’s awesome! Please review the gitbook action plan and write down any thoughts or questions that come to mind in this brainstorming document. Pseudo-time-series - Google Docs

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After the period of free thinking see if you can translate any of those thoughts into titles for “work packages”. For example, it could be as simple as “Create table of OSDR accesions for reanalysis”, or “Mine EBI for Time series Arabidopsis data”. The precise nature of the goal or insight depends on you! :slight_smile: Thanks for your collaboration on this… Pseudo-time-series_project_management - Google Sheets